Bolsonaro has been detained after authorities found he posed a concrete flight risk while under home confinement.
The one-time leader was found guilty of planning a government overthrow in last fall and sentenced more than a 27-year term in jail, but he continued under confinement pending legal challenges.
Top Judicial Official the presiding justice said the action to imprison the septuagenarian politician was a safety action after "new facts" were revealed.
This involved trying to remove his ankle monitor and a summons to a public vigil that could facilitate a potential flight.
In a filing authorising the arrest, Justice Moraes said data from the centre monitoring his home detention suggested the former leader's "intention to break the tracking monitor to ensure success in his getaway".
This, it said, would be assisted by the confusion caused by the demonstration called by his offspring.
His offspring, FlĂ¡vio, who works as a congressional representative, called for a meeting of his backers near the former president's residence to take place on Saturday night.
The senator wrote on online platforms on last Friday: Do you plan to struggle for your homeland, or see it all from your phone there on your settee? I invite you to struggle with us."
He said the gathering would be so supporters could offer prayers for his physical condition and for the reestablishment of democratic governance in our nation."
Part of the judge's ruling was the potential of his move to foreign missions near the residence, considering that the investigations revealed a record of planning to seek refuge through a embassy office", a declaration said.
The judicial paperwork highlights that the United States embassy in the capital, Brasilia, is positioned around 13km from his dwelling.
Bolsonaro's legal woes have provoked anger from fellow populist conservative United States President Donald Trump, leading him to enact a half-rate duty on imports of Brazilian goods.
The former president is being held in a federal law enforcement building in Brazil's capital city and will undergo a custody hearing on Sunday.
It was only on last Friday that the his legal team asked the Supreme Court to authorize him to complete his entire prison term under house arrest, with digital surveillance.
They also requested that Bolsonaro be permitted to depart his residence for healthcare, saying he needed ongoing care for pulmonary infections and other health problems.
Bolsonaro was determined responsible of orchestrating a conspiracy aimed at keeping him in power after he was defeated in the national vote to his ideological adversary, Lula.
High Court judges said that he was aware of a scheme which included plans to murder the current president and his running partner, Geraldo Alckmin, and to arrest and execute Justice Moraes - the top judicial official who has been managing Bolsonaro's trial.
The scheme was thwarted because it didn't receive the endorsement of the armed forces officials. His successor was inaugurated without incident on 1 January 2023.
But a week later, on January 8th, thousands of his backers invaded and destroyed official structures in the capital, BrasĂlia.
The law enforcement took action and around approximately 1,500 persons were taken into custody.
The magistrates found that the protesters had been provoked by him whose scheme, they said, was for the country's army to step in, reestablish control and return him to office.
At the period, the legal team called the over 27-year sentence unreasonably severe".
He was also barred from running for public office until 2060 - a decade minus two years after the conclusion of his imprisonment.
The ex-leader called the legal proceedings a "witch hunt and said it was intended to stop him running in the 2026 national vote.
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Randall King
Randall King